How to cite TractoFlow¶
Tip
If you want to analyse datasets with white-matter lesions, we highly recommends to use our devrived version of TractoFlow: TractoFlow Atlas based Segmentation (ABS) https://github.com/scilus/TractoFlow-ABS
If TractoFlow is used in a publication, please cite the following references:
[Theaud20] | Theaud, G., Houde, J.-C., Boré, A., Rheault, F., Morency, F., Descoteaux, M.,TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity, NeuroImage, https://doi.org/10.1016/j.neuroimage.2020.116889. |
[Kurtzer17] | Kurtzer GM, Sochat V, Bauer MW Singularity: Scientific containers for mobility of compute. PLoS ONE 12(5) (2017): e0177459. https://doi.org/10.1371/journal.pone.0177459 |
[DiTomaso17] |
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[Garyfallidis14] | Garyfallidis, E., Brett, M., Amirbekian, B., Rokem, A., Van Der Walt, S., Descoteaux, M., Nimmo-Smith, I., 2014. Dipy, a library for the analysis of diffusion mri data. Frontiers in neuroinformatics 8, 8. |
[Tournier19] | Tournier, J. D., Smith, R. E., Raffelt, D. A., Tabbara, R., Dhollander, T., Pietsch, M., … & Connelly, A. (2019). MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. bioRxiv, 551739. |
[Avants09] | Avants, B.B., Tustison, N., Song, G., 2009. Advanced normalization tools (ants). Insight j 2, 1–35. |
[Jenkinson12] | Jenkinson, M., Beckmann, C.F., Behrens, T.E., Woolrich, M.W., Smith, S.M., 2012. Fsl. Neuroimage 62, 782–790. |
If TractoFlow-ABS is used in a publication, please cite the following references:
[Theaud20] | Theaud, G., Houde, J.-C., Boré, A., Rheault, F., Morency, F., Descoteaux, M.,TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity, NeuroImage, https://doi.org/10.1016/j.neuroimage.2020.116889. |
[Theaud19] | G Theaud, JC Houde, A Bore, F Rheault, F Morency, M Descoteaux TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity https://www.biorxiv.org/content/10.1101/631952v1 |
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