Profiles

To select one or multiple profiles, please use the -profile option. For example:

$> nextflow run tractoflow/main.nf --root input_folder --dti_shells "DTI_SHELLS" --fodf_shells "FODF_SHELLS" -profile macos,fully_reproducible -with-singularity singularity_name.img -resume

Profiles available

macos

When this profile is used, TractoFlow will modify a parameter (scratch) for MacOS users.

use_cuda

When this profile is used, TractoFlow will use eddy_cuda for Eddy process. This feature is available with NVidia GPUs only. Without this profile, TractoFlow will run eddy_openmp.

fully_reproducible

When this profile is used, all the parameters will be set to have 100% reproducible results. This profile consist to set multi-thread parameters to be fully reproducible [Theaud20].