Install¶

Easy install method¶

Enter this command in your terminal (it downloads the container and TractoFlow code in the current directory):

curl -s https://tractoflow-documentation.readthedocs.io/en/2.1.0/install.sh | bash

TractoFlow pipeline¶

Release¶

Download the last release of TractoFlow pipeline:

$> wget https://github.com/scilus/tractoflow/releases/download/2.1.0/tractoflow-2.1.0.zip && unzip tractoflow-2.1.0.zip

For developers¶

Clone TractoFlow pipeline repository:

# Clone with HTTPS
$> git clone https://github.com/scilus/tractoflow.git

# Clone with SSH
$> git clone git@github.com:scilus/tractoflow.git

Singularity for TractoFlow¶

Release¶

Download the last release of the Singularity container for TractoFlow:

$> wget http://scil.dinf.usherbrooke.ca/containers_list/tractoflow_2.1.0_5f749f3_2020-06-29.img

For developers¶

Clone the singularity repository for TractoFlow pipeline:

# Clone with HTTPS
$> git clone https://github.com/scilus/containers-tractoflow.git

# Clone with SSH
$> git clone git@github.com:scilus/containers-tractoflow.git

Then, you can build the singularity image:

$> singularity build singularity_name.img singularity_tractoflow.def

Docker for TractoFlow¶

First, change the number of CPUs and RAM (recommended: 8 CPUs and 16Gb of RAM) in Docker (Preferences -> Advanced) and click on Apply & Restart.

Download the last release of the Docker container for TractoFlow:

$> docker pull scilus/docker-tractoflow:2.1.0

Please see Profiles section to use macos profile.