Install

TractoFlow pipeline

Release

Download the last release of TractoFlow pipeline:

$> wget https://github.com/scilus/tractoflow/archive/2.0.1.zip && unzip 2.0.1.zip

For developers

Clone TractoFlow pipeline repository:

# Clone with HTTPS
$> git clone https://github.com/scilus/tractoflow.git

# Clone with SSH
$> git clone git@github.com:scilus/tractoflow.git

Singularity for TractoFlow

Release

Download the last release of the Singularity container for TractoFlow:

$> wget http://scil.usherbrooke.ca/containers_list/tractoflow_2.0.0_8b39aee_2019-04-26.img

For developers

Clone the singularity repository for TractoFlow pipeline:

# Clone with HTTPS
$> git clone https://github.com/scilus/singularity-tractoflow.git

# Clone with SSH
$> git clone git@github.com:scilus/singularity-tractoflow.git

Then, you can build the singularity image:

$> singularity build singularity_name.img singularity_tractoflow.def

Docker for TractoFlow

Release

Download the last release of the Docker container for TractoFlow:

$> wget http://scil.dinf.usherbrooke.ca/containers_list/docker_tractoflow_2.0.0_a0cacfb_2019-04-25.tar.gz

Install the Docker container:

$> docker image load -i "docker_tractoflow_2.0.0_a0cacfb_2019-04-25.tar.gz"