Install¶
TractoFlow pipeline¶
Release¶
Download the last release of TractoFlow pipeline:
$> wget https://github.com/scilus/tractoflow/archive/2.0.1.zip && unzip 2.0.1.zip
For developers¶
Clone TractoFlow pipeline repository:
# Clone with HTTPS
$> git clone https://github.com/scilus/tractoflow.git
# Clone with SSH
$> git clone git@github.com:scilus/tractoflow.git
Singularity for TractoFlow¶
Release¶
Download the last release of the Singularity container for TractoFlow:
$> wget http://scil.usherbrooke.ca/containers_list/tractoflow_2.0.0_8b39aee_2019-04-26.img
For developers¶
Clone the singularity repository for TractoFlow pipeline:
# Clone with HTTPS
$> git clone https://github.com/scilus/singularity-tractoflow.git
# Clone with SSH
$> git clone git@github.com:scilus/singularity-tractoflow.git
Then, you can build the singularity image:
$> singularity build singularity_name.img singularity_tractoflow.def
Docker for TractoFlow¶
Release¶
Download the last release of the Docker container for TractoFlow:
$> wget http://scil.dinf.usherbrooke.ca/containers_list/docker_tractoflow_2.0.0_a0cacfb_2019-04-25.tar.gz
Install the Docker container:
$> docker image load -i "docker_tractoflow_2.0.0_a0cacfb_2019-04-25.tar.gz"