Changelog
2.4.3
Date: October 2023
- New features
Tractoflow is fully working with scilpy 1.6.0
Profile use_cuda is deprecated and replaced by use_gpu.
Profile use_gpu enables gpu implementation of local_tracking.
[BF] BIDS is fully supported with eddy/topup.
2.4.2
Date: March 2023
- New features
Tractoflow is not fully working with a python 3.10 environnment with scilpy 1.5.0
2.4.1
Date: November 2022
- New features
Automatic extraction of shells when computing DTI and fODF
Skip step bet_prelim_dwi when not needed
Add remove_invalid step in Tracking processes
Add possibility for complex BIDS structure with multiband acquisition and full reverse encoding acquisitions. (only available with cuda profile)
New profile “bundling”. It will activate custom tracking parameters to improve recobundle results. Local tracking will be enable with fa seeding mask and tracking mask.
New profile “connectomics”. It will activate custom tracking parameters to improve connectomics analysis.
2.3.0
Date: 05 April 2022
- New features
New profile Atlas Based Segmentation (-profile ABS)
New profile “skip preprocessing” for HCP dataset (-profile skip_preprocessing)
Add option to compute dwi sh (-sh_fitting true)
Gibbs correction (-run_gibbs_correction true)
2.2.1
Date: 09 April 2021
- Bug Fixed:
fully reproducible (ANTS_RANDOM_SEED fixed)
Tracking with FA (typo)
- New options:
participants_label: select specific subjects (BIDS input)
clean_bids: remove subject that are not complete (BIDS input)
2.1.1
Date: 08 Jul 2020
New features:
Support 4D reverse B0 images.
2.1.0
Date: 29 Jun 2020
New features:
BIDS support
Partitions (External drive, etc) automatically mounted. No supplementary config file needed
New processing profiles: use_cuda (for eddy_cuda use), fully_reproducible, macos
New options:
run_t1_denoising: Activate or deactivate T1 denoising
2.0.1
Date: 8 May 2019
Modify normalization mask and change some default option values
2.0.0
Date: 27 Mar 2019
First release for public access