Welcome to the TractoFlow user documentation!

TractoFlow pipeline is developed by the Sherbrooke Connectivity Imaging Lab (SCIL) in order to process diffusion MRI dataset from the raw data to the tractography. The pipeline is based on Nextflow and Singularity. The goal with this pipeline is to be fast and reproducible.

Install

• Before install
• Install

Pipeline

• Processing steps
• Input structure
• Options
• How to launch TractoFlow
• Results

Reference

• Changelog
• Github repositories
• License
• References