Changelog

2.4.0

Date: November 2022

New features
  • Automatic extraction of shells when computing DTI and fODF
  • Skip step bet_prelim_dwi when not needed
  • Add remove_invalid step in Tracking processes
  • Add possibility for complex BIDS structure with multiband acquisition and full reverse encoding acquisitions. (only available with cuda profile)
  • New profile “bundling”. It will activate custom tracking parameters to improve recobundle results. Local tracking will be enable with fa seeding mask and tracking mask.
  • New profile “connectomics”. It will activate custom tracking parameters to improve connectomics analysis.

2.3.0

Date: 05 April 2022

New features
  • New profile Atlas Based Segmentation (-profile ABS)
  • New profile “skip preprocessing” for HCP dataset (-profile skip_preprocessing)
  • Add option to compute dwi sh (-sh_fitting true)
  • Gibbs correction (-run_gibbs_correction true)

2.2.1

Date: 09 April 2021

Bug Fixed:
  • fully reproducible (ANTS_RANDOM_SEED fixed)
  • Tracking with FA (typo)
New options:
  • participants_label: select specific subjects (BIDS input)
  • clean_bids: remove subject that are not complete (BIDS input)

2.1.1

Date: 08 Jul 2020

New features:

  • Support 4D reverse B0 images.

2.1.0

Date: 29 Jun 2020

New features:

  • BIDS support
  • Partitions (External drive, etc) automatically mounted. No supplementary config file needed
  • New processing profiles: use_cuda (for eddy_cuda use), fully_reproducible, macos

New options:

  • run_t1_denoising: Activate or deactivate T1 denoising

2.0.1

Date: 8 May 2019

Modify normalization mask and change some default option values

2.0.0

Date: 27 Mar 2019

First release for public access